See also our related blog for the Pediatric Preclinical Testing Initiative.

Saturday, January 4, 2014

ALSF REACH Grant!


We are grateful to the Alex's Lemonade Stand Foundation for funding to enable the translation of a basic science discovery to preclinical trials so that Children's Oncology Group phase I and II trials might be possible.  The discovery of EphB4 as a therapeutic target in alveolar rhabdomyosarcoma was work of former HHMI medical student fellow, Imran Aslam (now a JHMI internal medicine resident).  Working in collaboration with the Druker laboratory, Imran uncovered the EphB4-EphrinB2 as the potentially highest value target in rhabdomyosarcomas.  This ALSF REACH award allows us to investigate an anti-EphB4 antibody in embryonal rhabdomyosarcoma, as well as an EphB4-nanoparticle sump in alveolar rhabdomyosarcoma, embryonal rhabdomyosarcoma and osteosarcoma.  This work will be carried on by our star muscle- and mouse models expert, Megan.  Check back regularly for updates on Megan's progress!

project updates:
01/14/2014:  Project Funded!
  
02/06/2014:  The immunocompromised mice we will be using to test the efficacy of an anti-EphB4 antibody have arrived. These mice will be used to create pilot orthotopic xenograft models of eRMS in the coming weeks.  
[ picture:  at center is Megan. ]  
  
02/20/2014:  This week, the first set of immunocompromised mice were injected with Rh18 cells (a human derived eRMS cell line). This begins a pilot study to demonstrate the latency with which a xenograft from this cell line will successfully create tumors in the strain of mice that we will use for future Alex’s Lemonade Stand experiments. In other strains of immunocompromised mice, Rh18 cells have generated tumors in 6-8 weeks- we’ll have to wait and see if these mice follow suit!
  
02/27/2014:  Currently we are growing a new cell line to inject into the mice which are part of our pilot experiment. To be consistent between experiments, we need the same amount of cells for each mouse we use. This new cell line is a little slow growing; as it is with many other research experiments, the hardest part is waiting!
  
03/14/2014:  more watchful waiting (nothing new).
  
03/20/2014:  A second round of cells have been injected into immunocompromised mice this week to continue our pilot experiments for this Alex’s Lemonade Stand project. Our next steps will be to observe these mice over the next few weeks and take note of when the tumor cells engraft and begin to grow.
  
03/27/2014:  no new news.  still in watchful waiting mode. 
  
04/04/2014:  still awaiting tumor development before initiating drug trials. 
  
04/10/2014:  Our pilot study is progressing nicely this week, with 3 of our orthotopic xenograft mice developing tumors. We will continue to observe our other injected mice for tumor development over the next several weeks.
  
04/14/2014:  See the blog post  http://kellerlabblog.blogspot.com/2014/04/imrans-paper-published-in-pnas.html for a link to today's published PNAS paper on this topic.  The studies in Imran's paper were the basis of this "next steps" project.  
  
04/17/2014:  The growth of the current tumors is progressing as expected. Our second group of mice have not grown any tumors yet, but they are still within the expected latency time for development. We continue to monitor them daily.

04/24/2014:  New batch of EphinB2-neutralizing biological agent received from pharma partner, facilitating the next series of therapeutic studies. 
  
05/08/2014:  mouse studies about to start for EphinB2-neutralizing biological agent
  
05/15/2014:  This week our official investigation on the efficacy of an EphrinB2-neutralizing agent has begun. The study mice arrived on Wednesday and were injected with Rh18 cells, a well characterized human eRMS cell line. Using our pilot data, we expect tumors to form within the next 2-3 months. Additionally, our second pilot study is still ongoing; we are continually monitoring the mice for development of tumors.
  
05/21/2014:  Rh18 xenograft studies still ongoing. 
  
05/28/2014:  not unexpectedly, still waiting on tumors to develop before treatments can begin...
  
06/05/14:  No new news to report this week. We do not expect treatment on our experimental mice to begin for a few more weeks, and we are continually monitoring both our initial pilot mice and current experimental for tumor development.
  
06/12/2014:  Still patiently waiting this week for mice in both experimental groups to develop tumors.  

06/26/2014:  Tissue microarrays of EphB4 and EphrinB2 on embryonal rhabdomyosarcoma are complete (it will take 1-2 weeks to analyze these with our pathologist collaborator).  We are also still patiently monitoring our immunocompromised mice for development of tumors. We are checking them 3 times a week so as soon as tumors develop we can begin treatment. Stay tuned!

  
07/10/2014:  Exciting news from the Keller Lab for our Alex’s Lemonade Stand project this week! The immunocompromised mice have started growing small tumors for the Rh18 eRMS cell line. In the coming weeks, most will begin receiving either an EphrinB2-neutralizing agent or a control drug.  Each mouse will be monitored daily and tumors measured three times per week.  This experiment is progressing on schedule and the next few months should be full of interesting data.

  
07/18/2014:  The Alex’s Lemonade Stand experiment is progressing nicely this week. All mice are tolerating the dosage of the drug well, and are not exhibiting any side effects/toxicity.  Expression of EphB4 and EphrinB2 in a small set of human osteosarcoma samples verified (request for TMA sent to COG); early studies of neuroblastoma are promising.  
  
07/31/2014:  This week, our experimental mice continue to be monitored daily. We will be wrapping up the in vivo testing in the coming weeks, then moving on to the data analysis phase.
  
08/08/2014:  EphB4 and EphrinB2 immunohistochemistry optimized for canine osteosarcoma (for pets with spontaneous osteosarcoma a potential preclinical model to help the dogs, and plan for a human osteosarcoma trial.)  Request sent to NCI comparative oncology program for canine TMA slides.  Meanwhile, the Rh18 eRMS mouse studies with the EphrinB2-neutralizing agent are wrapping up. 

  
08/21/2014:  The in vivo portion of our Alex's Lemonade Stand project is slowly coming to a close. This week some of the raw data analysis and number crunching was started, although it will be several weeks until that is finished. Additionally, there are various supporting experiments that still need to be executed to fully determine the efficacy of the EphrinB2 blocking agent. 
  
09/11/2014:  This week our supplemental experiments continue. We are now using RT-PCR to examine the amount of metastasis in the harvested lungs of our treated and control mice. These experiments are time consuming, but will help us decide if the EphrinB2 neutralizing agent administered to the mice was effective in diminishing the metastatic capability of RH18 cells.  

10/02/2014:  Canine osteosarcoma TMA's for staining received; COG neuroblastoma TMA slides approved but MTA still to perform; COG osteosarcoma TMA proposal still in review (since July). rt-pcr strategy for above EphrinB2 blocking agent mouse studies (completed) is in revision.  Some delays occurred as Megan spent the last 3 weeks in a collaborator's lab at Cold Spring Harbor Laboratory for a new strategic collaboration.    
  
10/16/2014:  A few setbacks this week owing to the particularly specific requirements of some molecular biology techniques. We have ordered a few new reagents in an attempt to complete the RT-PCR experiments, and should be back at the bench soon.
  
10/30/2014:  Our new reagents for the revised experiments have just arrived, and soon we should have a clear picture about the efficacy of the EphrinB2 blocking agent on lung metastasis.
  
12/04/2014:  Preclinical trial of sEphB4-HSA in Rh18 orthotopic xenografts is now complete.  The next step is preclinical testing in a patient-derived xenograft (see the description of this autopsy-derived model).  
  
12/31/2014:  Project on short term hold pending transfer of grant from OHSU to our new, bold adventure at cc-TDI. 
  
01/06/2014:  New lab at cc-TDI started!
  
01/07/2014:  Collaborators Ayeza Bajwa and Atiya Mansoor have completed analysis of human eRMS tissue microarrays with unexpected results that point to key differences in aRMS and eRMS with respect to EphB4 and EphrinB2 biology. 
  
01/08/2015:  ALSF REACH grant year 2 funding received... this is the first grant funding for cc-TDI ... thank you, ALSF!
  
01/15/2015:  Strategic meeting (teleconference) held including pharma and CSU partners to consider a companion animal trial for osteosarcoma using EphB4/EphrinB2 therapeutics.  
  
01/27/2015:  Integration of animal study underway by Matthew, including ongoing tissue analysis from these studies.  
  
02/06/2015:  We have begun considering approaches to separating cell-autonomous and tumor microenvironment contributions of EphB4-EphrinB2 signaling in eRMS.  

02/13/2015:  analysis of tumor cell vs stroma cell expression of EphB4 and EphrinB2 reveals distinct differences in alveolar and embryonal rhabdomyosarcomas.

02/20/2015:   For Rh18 xenograft studies (completed), lung metastasis counts are in progress and pharmacodynamic studies are planned.
  
02/27/2015:  COG TMA requests for osteosarcoma and neuroblastoma slides are approved, but MTAs are still in progress. 
  
03/04/2015:  Rh18 xenograft pharmacodynamics studies in progress.
  
05/06/2015:  Rh18 xenograft pharmacodynamics studies done; Rh18 lung metastasis count in progress. 
  
05/20/2015:   COG osteosarcoma TMA slides arrived May 8; working to verify EphrinB2 expression in PDX models.
  
06/03/2015:  Rh18 xenograft lung metastasis count done.
  
07/29/2015:  CTEP approved neuroblastoma TMA slides protocol July 26.
  
08/07/2015:  westerns on PDXs still ongoing; neuroblastoma TMA slides received.


Tuesday, December 31, 2013

The Lane-Bella Project

We are grateful to the Live Like Bella Foundation and the Thumbs Up for Lane Goodwin Childhood Cancer Foundation for co-funding our Lane-Bella Project, "towards a clinical trial of the VasG3 antibody in alveolar rhabdomyosarcoma".  This work is not only supported by a very generous gift from National League Rookie of the Year, Jose Fernandez, but also by families that have been touched by rhabdomyosarcoma.  Angie and Shannah will hold us accountable, and so check back frequently for project updates from Jinu & Charles in this blog entry!

weekly blog update:
12/31/2013:  funding arrived!  we are also filmed a short video to explain the project, to be available soon!
  
01/01/2014:  the video...
  

01/09/2014:  while we wait for the internal university process for account setup, we have begun conversations with the pharma on antibody doses to use for initial studies.
  
01/17/2014:  irb and iacuc approvals are in place so that the university account can be set up.
  
01/24/2014:  accounts set up.
  
01/30/2014:  requests for antibody sent to pharma partner.  mice for studies ordered.
  
02/06/2014:  mice for initial/pilot studies received.  cells thawed for expansion - needed before implantation into mice.  first experiment's plan reviewed with team.
  
02/13/2014:  We have three human aRMS cell lines in culture for injection into immune-deficient mice. Rh41 is growing well and will be injected into mice early next week. Rh5 and PCB380 are taking time to recover from cryopreservation.  See also the press release
  
02/20/2014:  Rh41 tumor cell innoculations done today.  
  
02/27/2014:  No new news.  We are waiting for the Rh41 injected mice to grow tumors. 
  
03/06/2014:  As expected, still watchful waiting on Rh41 mice. 
  
03/14/2014:  Discussed studies with pharma company.  more watchful waiting of Rh41 mice. Rh5 mouse studies initiated this week. 
  
04/03/14:  Rh41 xenografts beginning bear palpable masses.  
  
04/10/2014:  Rh41 latency confirmed; Rh5 latency studies still underway; stay tuned for a related publication announcement on Monday!
  
04/14/2014:  See the blog post  http://kellerlabblog.blogspot.com/2014/04/imrans-paper-published-in-pnas.html for a link to today's published PNAS paper on this topic.  The studies in Imran's paper were the basis of this "next steps" project.  
  
04/17/2014:  Rh41 tumor growth rates in NSG mice has been determined & experiment ended.  Rh5 beginning to form tumors. 
  
04/24/2014:  Rh5 xenografts progressing as expected.  New batch of EphB4 neutralizing antibody received from pharma partner, facilitating the next series of therapeutic studies. 
  
05/01/2014:  Rh5 pilot tumor growth rate studies complete.  Therapeutic studies to follow. 
  
05/08/2014:  Working with partner (Jax) to plan PCB380 (aRMS) patient-derived xenograft testing with the EphB4 neutralizing antibody.
  
05/08/2014:  partnership experiment continues to be in preparation phase. 
  
05/15/2014:  no specific progress this week (still awaiting partner preparations). 
  
05/21/2014:  PCB00380 studies may begin in 1-2 weeks.  Meanwhile, discussions with COG leaders this week indicate that phase I testing will be made much easier if we can demonstrate EphB4 blocking antibody activity in 2 or more additional pediatric cancers.  This is fair.  In an a related project, we have been examining osteosarcoma (very early studies) and neuroblastoma is a possible other cancer to consider. 

05/29/2014:  no new news to report. 

06/06/2014:  We are happy to welcome our Summer student Renae to the lab.  Renae will be assisting Jinu in our EphB4 RMS studies.  Meanwhile, PCB00380 experiments are about to commence.  It will take ~6 weeks for these tumors to arise, and will reach the size for treatment to begin in 12-16 weeks.  
  
06/12/2014:  still awaiting tumor formation. interestingly, our Summer student Teagan has found both EphB4 and EphrinB2 expression in canine osteosarcoma.  There are a lot of other studies to consider, but companion pet cancer patients often can be the first to receive a treatment on its way to pediatric cancer trials.  more to follow on this very early observation. 
  
06/26/2014:  parallel studies are now ongoing to explore human osteosarcoma expression of EphB4 and EphrinB2.  We're still awaiting tumor growth of the alveolar rhabdomyosarcoma mice.   
  
07/18/2014:  still awaiting tumor growth.
  
07/26/2014:  still no growth of tumors implanted in June.  Considering parallel model intiation.
  
08/08/2014:  patient-derived human xenograft (PDX) models are slow to grow!  We will start xenograft studies using human aRMS cell lines in the coming weeks: results from the PDX and orthotopic cell line xenografts should both be completed by November/December.  
  
09/11/2014:  awaiting tumor growth.  have been invited to present the data thus far to a cooperative sarcoma clinical trials group on October 7 in Gaithersburg. Parallel studies of EphB4 as a therapeutic target in osteosarcoma continue to look promising.  
  
10/02/2014:   we received as second batch of VasG3 antibody from the company, and have ordered a new set of mice for the Rh30 cell line xenograft studies.  Still awaiting PDX tumor growth.  
  
10/16/2014:  new set of mice due in 2 weeks.  Meanwhile, Jinu is gearing up to have enough cells (for this and another study).  That's a lot of plates!
  
10/30/2014:  All 25 mice have received Rh30 aRMS cells. We are waiting for the tumors to develop in these mice to start treatment with EphB4-antibody from Vasgene.
  
11/13/2014:  For the Rh30 aRMS cell line studies, tumors in mice are palpable and the mice are being treated with the EphB4 antibody.  For the PCB00380 patient-derived xenograft studies, we implanted 5 mice in June and another 5 in August.  We are seeing tumor growth in the August batch.  Both tumors are quite small.  We might see the tumors reach a modest size in late December at which time we can split the tumor in order to generate the many-needed study mice.  This model is slow, so EphB4 antibody dosing will probably begin in March and wrap up in May 2015.  This is the nature of a more authentic patient-derived xenograft (PCB00380) versus the cell line xenografts with Rh30 (Rh30 was created way back in 1987... it's hard to say whether all of its biology is representative of the disease in 2014; however, for the field Rh30 is (unfortunately) still a standard model).   
 
12/11/2014:  Preclinical trial of Rh30 xenograft animals treated with VasG3 is now complete and under analysis. 
 
12/31/2014:  Project on short term hold pending transfer of grant from OHSU to our new, bold adventure at cc-TDI. 

01/06/2015:  New lab started!
  
02/04/2015:  Still awaiting transfer of grant.  Meanwhile for he PCB00380 patient-derived xenograft studies (aRMS model), tumors implanted in December are still too too small to begin treatment.   

02/13/2015:  Thank you, LiveLikeBella, for the funds to initiate the first half year's project!  PCB00380 tumors large enough to begin treatment with VasG3. 


02/18/2015:  PCB00380 treatment studies ongoing.



02/27/2015:  PCB00380 treatment studies still ongoing.
  
03/12/2015:  For PCB00380 treatment studies, synchronous enrollment was done (treatment started on the same day for all tumors).  Some tumors were smaller than others, and it appears that they were at different growth rates.  To have more consistent data, we are going to repeat the experiment with asynchronous enrollment... that is, tumors of the same size begin treatment, even if different tumors begin treatment on different days.
  
03/25/2015:  Repeat study of PCB00380 started (tumors innoculated). 
  
04/08/2015:  New supply of VasG3 received from the manufacturer; ready for repeat mouse study.  
  
04/20/2015:  Awaiting tumor growth in PCB00380 animals.
  

05/07/2015:  In keeping with our publication this past year (PDGFRβ reverses EphB4 signaling in alveolar rhabdomyosarcoma, Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6383), we are next going to test the combination of VasG3 (to inhibit EphB4) and imatinib (to inhibit PDGFRb).  A video progress report is below:  




05/07/2015:  repeat of VasG3 inPCB00380 is underway.  
  
06/03/2015:  pharmacodynamics of VasG3-treated Rh30 xenografts in progress.
  
06/17/2015:  no growth so far for repeat of VasG3 inPCB00380.


06/03/2015:  pharmacodynamics of VasG3-treated Rh30 xenografts is done.
  
07/15/2015:  lung metastasis count of VasG3-treated Rh30 xenografts in progress.
  
07/28/2015:  repeat of VasG3 inPCB00380 is nearly complete.  lung metastasis count of VasG3-treated Rh30 xenografts is done. 
  
08/05/2015:  checking PDXs for best model to try VasG3 - other agent combinations. 
  

Wednesday, December 11, 2013

The Community takes the lead

An exciting initiative from families of rhabdomyosarcoma patients has begun at http://focusonrhabdo.org/.  The group has the goal of making rhabdomyosarcoma a uniformly survivable disease with an improved quality of life.  A great number of rhabdomyosarcoma researchers will provide support to this group, but the goals and mission are being set those who may know the disease best, the families. 
  

Wednesday, November 27, 2013

Congratulations, Ken!

Ken's recent paper on a fascinating and clinically-relevant aspect of alveolar rhabdomyosarcoma biology has just been accepted to PLoS Genetics. Co-authors included lab alumnist Imran Aslam (now a medicine resident at Johns Hopkins), OHSU collaborator Wolfram Laub, UTHSCSA collaborator Joel Michalek, Harvard collaborators Simone Hettmer and Amy Wagers, JHMI collaborators David Loeb and Bree Wilky and Cleveland Clinic collaborator Brian Rubin.

This is Ken's 8th paper (and 6th first author paper) from his 2 year postdoctoral fellowship in our lab (with one additional first author manuscript soon to be submitted). Amazing productivity for Ken, who is now faculty at Uji Takeda Hospital and Kyoto Prefectural University.
 
The study above was made possible by funding from the NCI.

Monday, November 25, 2013

Congratulations, Ken and Eri!

Eri & Ken's co-first author study of the role of the retinoblastoma gene in rhabdomyosarcoma has been accepted to the journal, Skeletal Muscle.  Co-authors include lab members Noah, Jinu and Matthew; lab alumni Olivia, Elaine and Koichi; as well as collaborators Ayeza & Atiya (OHSU Pathology), Sherrie (Univ of Utah), Paul & Sean (NCI), Harry, Lee Ann Chris, Yidong and Joel (UTHSCSA), Brian (Cleveland Clinic) and Monica (IMPPC, Barcelona).
  
This work was made possible by a gift from the Nylund estate and fellow funding to Jinu and Koichi by the Scott Carter Foundation.

[update 11/25/2013:  the manuscript Rb1 loss modifies but does not initiate alveolar rhabdomyosarcoma is now available online here.]

Saturday, November 23, 2013

Open Science Forum: Target Discovery in Rhabdomyosarcoma

Would members of the community be interested in sponsoring an experiment to launch drug discovery in rhabdomyosarcoma?  We are experienced in building drug screens from our leadership of the international dipg preclinical consortium and now want to build the resources to do the same thing for rhabdomyosarcoma.  We need $16,000 to build the rhabdomyosarcoma-specific 60 drug screen.  Thereafter, screening each new tumor culture would cost approximately $600. 

In parallel, we have an unusual set of other compounds which our lab members call, "Strange Brew."  There's no other way to explain this set of compounds, which draw upon every unusual observation of cancer and muscle biology since the early 1900's.  This higher risk screen is a $21,000 project... we could really use a sponsor for this second project as well.

Plates from both screens would not only be used by our lab, but also distributed to rhabdomyosarcoma research labs in the U.S. and internationally.  We have a good feeling about this.

Friday, November 15, 2013

Rhabdomyosarcoma Lab-ome

We've been asked on occasion what other labs do rhabdomyosarcoma research.  Below is a preliminary list (in no specific order)... we realize many are left off accidentally, but we will update this blog entry regularly to add more:

langneau lab,   http://langenaulab.com/ 
houghton lab (PPTP),   http://pptp.nchresearch.org/
rudnicki lab,   http://www.rudnickilab.ca/


simone hettmer* lab,   tba
jonathan fletcher lab,   tba
amy wagers lab,   tba

rosella rota lab,   tba

alessandro fanzani lab,   tba


* rising star